Factors @ Stark Lab

Gene Name Type Activity (log2) in S2 cells
(avg/min/max)
Cluster Data available
S2Kc167BG3OSCHeLa
Kdm4A (FBgn0033233) cofactor
 
(-0.83/-3.76/-0.10)

Factor activity

Additional information

Kdm4A [FlyBase] | Kdm4A [FlyMine] | Kdm4A [BDGP]

H. sapiens orthologues1

KDM4A (HGNC:22978, ENSG00000066135), KDM4C (HGNC:17071, ENSG00000107077), KDM4B (HGNC:29136, ENSG00000127663)

Functionally similar transcription factors and cofactors

CDS DNA Sequence2

ATGTCCACGAGATCTTCATTCGCCGATGAAGAGCAGAACAAAGTGCCCCGTATCATGACCTTCCGTCCCAGCTACGAGGAGTTTCAAAATTTTTCCGCCTACATTGAGTACATTGAGTCTCGGGGAGCACACTTAGCCGGCTTGGCCAAAATCCAACCACCTGCGGAATGGGTGCCCCGAAAGTCGGGCTACGACATAGACAACATCAACATGACCATTCCAGCGCCGATTTGCCAAGTAGTCACTGGGGCGCACGGGGTGTACCAGCAAATCAACATCCAGCAGCGCCGGCAGATGACCTTGCGCCAATTCATGGAGAAGGCCAACTCGGAGCTGCACCAGACACCGAGGCACTTCGACTACGACGATCTGGAGCGCAAGTACTGGAAGAACATCACCTACATATCGCCACTGTATGCAGCCGATGTCAAGGGATCGCTGAGTGATGAAGACCTTGACGTTTGGAACATTGGACGCTTGGACACCATATTAAACTTGGTCAACACTGACTACAACATAATCATCGATGGGGTAAACACGGCTTACCTCTACTTTGGCATGTGGAAGAGCTCTTTTGCCTGGCATACCGAGGACATGGATCTGTATTCTATTAACTATCTGCATTTTGGAGCACCCAAAACCTGGTACGCCATTCCGCCGGCGTATGGCAGACGTCTGGAGAAGCTGGCGAACGAAACCTTCTCTGAGAACTACCAGGAATGCAATGCCTATCTTCGCCATAAGATGACCATGATCAGTCCGAAGGTGCTGCGCCAGCACAACATACCTTACAACAAGATCACGCAGGAAGCGGGCGAAATCATGATTACATTTCCCTTCGGCTACCATGCCGGGTTCAATCATGGCTTCAACGGCGCCGAGTCGACCAACTTTGCGTCGAAGCGTTGGATCGAGTACGGCAAGCGGGCTAGTATTTGCCGATGCCGCAGCGACATGGTTAAGATCTCGATGGAGACCTTCGTACGCCGTTTCCAGCCAGAGCGATACGATAATTGGCTGAAAGGTCAGGACATGGGCTGTCATCCCGAGGAGCCGGGTAAAATATGCGCTGCAGCACCACCCACTTTGAATGAGTACGAGAAACAGGAAAACTTACGTGCAGCCAAATCCGAAGAAGAATCTCCGCAGAAGCGAGGCTGCTCGCTGGCCGGCAATGGATGTGAACGAAACGCGGAGTCCGCCGAGGATGTCGACGATAAGGCCAGTGTGAGCAGCTATAGCAGCTGCCGCCAGCTGCAGCCAGTTGTCAAACTACGCAAACTCCCAACCATTGCGTCTGTACCTGAACCATCTTCCGCCCCCAAGAGATACGACTTCAATACTGAGGCTGTGGTGCGCGTAAAGCGCCTATGGAATGAACTGCCCTGTCCGGATCGAGGGGCCAACCTGCTCACCAACGGTGTAGTAAAGAATACCAAACGAATGCGCTTCCAGACAAAAGTACTCACACTTGACGACGAGGAT

CDS AA Sequence2

MSTRSSFADEEQNKVPRIMTFRPSYEEFQNFSAYIEYIESRGAHLAGLAKIQPPAEWVPRKSGYDIDNINMTIPAPICQVVTGAHGVYQQINIQQRRQMTLRQFMEKANSELHQTPRHFDYDDLERKYWKNITYISPLYAADVKGSLSDEDLDVWNIGRLDTILNLVNTDYNIIIDGVNTAYLYFGMWKSSFAWHTEDMDLYSINYLHFGAPKTWYAIPPAYGRRLEKLANETFSENYQECNAYLRHKMTMISPKVLRQHNIPYNKITQEAGEIMITFPFGYHAGFNHGFNGAESTNFASKRWIEYGKRASICRCRSDMVKISMETFVRRFQPERYDNWLKGQDMGCHPEEPGKICAAAPPTLNEYEKQENLRAAKSEEESPQKRGCSLAGNGCERNAESAEDVDDKASVSSYSSCRQLQPVVKLRKLPTIASVPEPSSAPKRYDFNTEAVVRVKRLWNELPCPDRGANLLTNGVVKNTKRMRFQTKVLTLDDED

1   H. sapiens orthologs were obtained from InParanoid8, in particular D.melanogaster-H.sapiens.orthoXML.
2   Genomic sequences of the transcription factors were obtained from the dm3/BDGP Release 5 genome assembly. In the case of cofactors, the genomic sequences stand for our results obtained by deep sequencing.