Factors @ Stark Lab

Gene Name Type Activity (log2) in S2 cells
(avg/min/max)
Cluster Data available
S2Kc167BG3OSCHeLa
Rfx (FBgn0020379) TF
 
(1.74/-1.07/4.57)

Factor activity

Additional information

Rfx [FlyBase] | Rfx [FlyMine] | Rfx [BDGP]

H. sapiens orthologues1

RFX3 (HGNC:9984, ENSG00000080298), RFX2 (HGNC:9983, ENSG00000087903), RFX1 (HGNC:9982, ENSG00000132005)

Functionally similar transcription factors and cofactors

CDS DNA Sequence2

ATGACCACACGCCTGGCTCCACAGCGCCAGTTCATCCTCTCGACGCGCTCTGCCATCGTGGATGCCACCTCGCCACCTGAGGACTCAGCGGAGGAGCAGCAGCAGCTGACTGTCGAGGTGGAGAGCGCCACCAACGGAGTCATTACCAATAGCACCACATCGCCACCGCCGCATGCCGAGCAGTTCGAGTTCTGCACGGAGGATGGAGTCGTTGTGTCCGCCACACTGGAGGATGTCATGACACAGAACTGCCAGCTCTTGCAGAAGAAACTAGTCGACGAGGACGACGATTCGACGGGAGTAGGAGCAACGGATGCCGATCAGCTGGAGGTGATTAGCGTTGTACTGCCCATGGATGCCGAGGACTCGACCAGCGATGCCCATCTACACGGGCATGTGGTGAACAGCAGCAGCGACACCATGGGTACCATTACCACCACGGAACCGAATGGGACCACCGTCACCCACTCGATACCCATTCACAGTATGGCCGATCTGGCCGCGATCAAGGATGGCGTGGATCTGGCCCAGCAGGTGGCCAATGGCCAGGTGACCGTGGTGCAGACCACCGAGGACGACGATGGAACGCCCTTCATTACCGTGACGGTTTCGGGCCAGGAGCAGAACTACCAAGTGCAATATGTGGACTCTGAGCTGTACCACAGCAACTCAAGCCAGACGCAAATGACGTATCCGTTCTGCCCAGTGGGGGACTACCAGGGCAACGGCCAGACGGCGTACTACTCGACCACGGGTCAGTACGGAACCACCTCGTCGGCCGGAGGCTCCTCGAACGGAGCTCACTCCACGACGCTGCCGTACCTGGTGCCCGTGGAGGAGGGCATCCTCCTCAATGGTTCCGCACACTCGCTGTCGCAGTCGCAGTCACAATCGCATGGACGCGATTCGCCGCACAGCCTGACGGTGAGTAGCAGGGATTGGGAGCGGGATGCGGACCGGGTGAACGGAACTAATCGCCACTGGGTGCAGGAGGTCGCGTACATCCAGGAGGCGCAGAGCACGCCCCAGACGCCCACCTCGACGACCACGACCCATTCGGCTAGCGGCGGCAGCCTGGGAACGGGCGGTGGAGGCGCCTCCCCGGATTCCGACCAGAGTGCGCTCGGCAGCAGCAACAAGATTGCCTCGGCAACGATCAAGTGGCTGTCGCGCAACTACGAAACGGCGGATGGTGTGAGCCTGCCCAGGAGCACGCTGTACAACCATTACATGCAGCACTGCAGCGAGCACAAGCTAGAGCCCGTGAATGCGGCCAGTTTCGGCAAGCTGATACGTTCCGTGTTCTCCGGACTGCGCACACGTCGCCTGGGCACGCGCGGCAACTCCAAGTACCACTACTATGGTATCCGCATTAAGCCCGGCTCGTTGCTGAACAGCCAGGCGATGGACGACAAGCAGATGCTGGCCGCCGGCTACGGACCATCCTCGGACGGAACCGGCGGACCAGGCAGCGGACCGATGGTCAGCGTCACCAGCAGCACCGCCGGACAGCTGACCGGATCCAATGGATTGGGCGGTGGCCATGGCCAGCGGCACAGCAACGGCACCAAGAAGCACACCTTCAAGCCGGAGACCTACGAGGCGTGCATTCAGTACATCGGCGATGGAACCAGTGCCCTGCCCTCGTTTCCGCCCATCGAGCTGAACCACAGCTTCAACAGCGAACTGACCCTGGAGGACGTGGACACCTTCCGGGGCCTGTATCGGGAGCATTGCGAGTCCTTCCTGGACGCCGTGCTCAATCTGGAGTTCAACACCGTGGAGTTCCTGCTGCGCGACTTCTGGCGGGCCAGCGACAACAATAATCTGGACGAGTGCGAGGAGGAGAAGTACTTGAGCAAGACGAAACTGTATCTGTTGTGCCACTGCGCAGAAGTGCAGAAGTTCGTGCGAGAGGTGGACTACCAATTCTACCAGAACACCGTCGATGTCATCATACCGGATGTGCTCCGCTCCATACCAAACGCCCTGACCCAGGCCATCAGAAACTTCGCCAAGAACCTGGAGATCTGGCTATGTGAGAGCATGCTGGGCGTGCCGGAGCAGCTTGCCCAGATCAAGACCAGTGCCGTCTCGGCATTCTGCCAAACGCTGAGGCGCTACACCTCGCTGAATCACCTGGCGCAGGCGGCTCGAGCAGTGCTCCAGAATGGTGCACAGATCTCCCAGATGCTAAGCGATCTCAATCGTGTCGATTTCCACAATGTTCAGGAGCAAGCTGCCTGGGTGAGTCAATGTGCGCCCGCCGTGGTCCAGCGCTTGGAGAGCGATTTCAAGGCCGCTCTGCAGCAGCAGAGCTCCCTGGAACAGTGGGCCAGCTGGCTGCAACTGGTGGTGGAATCGGCCATGGAGGAGTACAACGGGAAGCCGACTTATGCCAGAGCCGCCCGCCAGTTTCTGCTAAAGTGGAGCTTCTACAGCTCTATGATCATTCGTGACCTGACGCTGAGATCCGCCTCCAGCTTCGGGAGCTTCCACCTAATTCGCTTGCTGTTCGATGAGTACATGTTCTACCTGGTGGAGCACAAAATCGCCGAGGCACAAGACAAAACAGCCATTGCGGTCATTTGCGAAAGAATGAAAAAGGACATGGACTTTGAGTTCGAGTGCCAGTTCGCCTACATTACCAGCGACACGGAGCACCAGACGACTCCGAGCTCGGCCAGCAGTGGAGGCGACGTGGGCAACGAGGCCAAGCGACTGAAGCAGGAA

CDS AA Sequence2

MTTRLAPQRQFILSTRSAIVDATSPPEDSAEEQQQLTVEVESATNGVITNSTTSPPPHAEQFEFCTEDGVVVSATLEDVMTQNCQLLQKKLVDEDDDSTGVGATDADQLEVISVVLPMDAEDSTSDAHLHGHVVNSSSDTMGTITTTEPNGTTVTHSIPIHSMADLAAIKDGVDLAQQVANGQVTVVQTTEDDDGTPFITVTVSGQEQNYQVQYVDSELYHSNSSQTQMTYPFCPVGDYQGNGQTAYYSTTGQYGTTSSAGGSSNGAHSTTLPYLVPVEEGILLNGSAHSLSQSQSQSHGRDSPHSLTVSSRDWERDADRVNGTNRHWVQEVAYIQEAQSTPQTPTSTTTTHSASGGSLGTGGGGASPDSDQSALGSSNKIASATIKWLSRNYETADGVSLPRSTLYNHYMQHCSEHKLEPVNAASFGKLIRSVFSGLRTRRLGTRGNSKYHYYGIRIKPGSLLNSQAMDDKQMLAAGYGPSSDGTGGPGSGPMVSVTSSTAGQLTGSNGLGGGHGQRHSNGTKKHTFKPETYEACIQYIGDGTSALPSFPPIELNHSFNSELTLEDVDTFRGLYREHCESFLDAVLNLEFNTVEFLLRDFWRASDNNNLDECEEEKYLSKTKLYLLCHCAEVQKFVREVDYQFYQNTVDVIIPDVLRSIPNALTQAIRNFAKNLEIWLCESMLGVPEQLAQIKTSAVSAFCQTLRRYTSLNHLAQAARAVLQNGAQISQMLSDLNRVDFHNVQEQAAWVSQCAPAVVQRLESDFKAALQQQSSLEQWASWLQLVVESAMEEYNGKPTYARAARQFLLKWSFYSSMIIRDLTLRSASSFGSFHLIRLLFDEYMFYLVEHKIAEAQDKTAIAVICERMKKDMDFEFECQFAYITSDTEHQTTPSSASSGGDVGNEAKRLKQE

1   H. sapiens orthologs were obtained from InParanoid8, in particular D.melanogaster-H.sapiens.orthoXML.
2   Genomic sequences of the transcription factors were obtained from the dm3/BDGP Release 5 genome assembly. In the case of cofactors, the genomic sequences stand for our results obtained by deep sequencing.