Factors @ Stark Lab

Gene Name Type Activity (log2) in S2 cells
(avg/min/max)
Cluster Data available
S2Kc167BG3OSCHeLa
so (FBgn0003460) TF
 
(-1.04/-3.75/0.03)

Factor activity

Additional information

so [FlyBase] | so [FlyMine] | so [BDGP]

H. sapiens orthologues1

SIX1 (HGNC:10887, ENSG00000126778), SIX2 (HGNC:10888, ENSG00000170577)

Functionally similar transcription factors and cofactors

CDS DNA Sequence2

ATGTTACAGCATCCCGCCACAGATTTCTACGACTTGGCCGCGGCCAATGCGGCTGCCGTTCTCACCGCCCGTCACACGCCTCCTTATAGTCCCACCGGTCTCAGCGGATCGGTGGCCCTGCACAACAACAACAACAATAACAGCAGCACCAGCAATAACAACAACAGCACTCTGGACATCATGGCGCACAACGGCGGCGGAGCAGGCGGTGGCCTCCATCTGAACAGCAGCAGCAACGGCGGCGGCGGCGGCGGAGTGGTCAGTGGTGGAGGCTCCGGCGGCAGGGAGAACCTGCCCAGCTTCGGCTTCACCCAGGAGCAGGTGGCCTGTGTTTGCGAGGTTCTCCAGCAGGCGGGCAACATCGAAAGACTGGGCCGCTTCCTCTGGTCGCTGCCACAATGTGATAAGCTGCAGCTGAACGAGTCCGTGCTGAAGGCCAAGGCGGTCGTCGCATTCCACCGGGGACAATACAAGGAGCTGTACCGCCTGCTCGAGCATCACCACTTCTCGGCCCAGAATCACGCCAAGCTCCAGGCCCTGTGGTTGAAAGCGCATTATGTGGAAGCCGAAAAACTGCGCGGAAGACCCTTGGGTGCTGTTGGCAAATATCGTGTTCGCCGTAAATTTCCATTGCCCCGCACCATCTGGGATGGCGAGGAGACGAGCTACTGTTTTAAGGAAAAATCGCGCTCCGTACTGAGGGACTGGTACTCGCACAATCCGTATCCATCGCCGCGGGAGAAACGCGATCTGGCCGAGGCCACAGGACTGACCACCACGCAGGTTTCCAATTGGTTCAAGAACCGACGACAAAGAGATCGAGCTGCCGAACACAAAGACGGCTCCACGGACAAGCAGCACCTTGACTCCTCCAGCGACTCCGAGATGGAGGGCAGCATGTTGCCCAGCCAGAGTGCGCAGCACCAGCAGCAGCAGCAACAGCAGCAGCATTCACCCGGCAACAGCAGCGGCAACAACAACGGCCTGCATCAGCAGCAGCTGCAGCATGTCGCCGCCGAGCAAGGCCTGCAGCACCATCCGCACCAGCCACATCCCGCCAGCAATATCGCCAATGTCGCCGCCACCAAGAGCAGTGGCGGCGGCGGCGGAGGAGGCGTGAGTGCGGCGGCCGCTGCCCAGATGCAAATGCCTCCACTGACCGCCGCCGTGGCCTATTCGCACCTGCACAGCGTGATGGGCGCCATGCCCATGACCGCCATGTACGACATGGGCGAGTACCAGCACTTA

CDS AA Sequence2

MLQHPATDFYDLAAANAAAVLTARHTPPYSPTGLSGSVALHNNNNNNSSTSNNNNSTLDIMAHNGGGAGGGLHLNSSSNGGGGGGVVSGGGSGGRENLPSFGFTQEQVACVCEVLQQAGNIERLGRFLWSLPQCDKLQLNESVLKAKAVVAFHRGQYKELYRLLEHHHFSAQNHAKLQALWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRSVLRDWYSHNPYPSPREKRDLAEATGLTTTQVSNWFKNRRQRDRAAEHKDGSTDKQHLDSSSDSEMEGSMLPSQSAQHQQQQQQQQHSPGNSSGNNNGLHQQQLQHVAAEQGLQHHPHQPHPASNIANVAATKSSGGGGGGGVSAAAAAQMQMPPLTAAVAYSHLHSVMGAMPMTAMYDMGEYQHL

1   H. sapiens orthologs were obtained from InParanoid8, in particular D.melanogaster-H.sapiens.orthoXML.
2   Genomic sequences of the transcription factors were obtained from the dm3/BDGP Release 5 genome assembly. In the case of cofactors, the genomic sequences stand for our results obtained by deep sequencing.