Factors @ Stark Lab

Gene Name Type Activity (log2) in S2 cells
(avg/min/max)
Cluster Data available
S2Kc167BG3OSCHeLa
sna (FBgn0003448) TF
 
(-1.44/-4.31/-0.70)

Factor activity

Additional information

sna [FlyBase] | sna [FlyMine] | sna [BDGP]

H. sapiens orthologues1

SNAI2 (HGNC:11094, ENSG00000019549), SNAI1 (HGNC:11128, ENSG00000124216), SNAI3 (HGNC:18411, ENSG00000185669)

Functionally similar transcription factors and cofactors

CDS DNA Sequence2

ATGGCCGCCAACTACAAAAGCTGCCCGCTAAAGAAGCGCCCCATTGTCTTCGTGGAGGAGCGTCTGCCACAAACGGAGGCCTTGGCCCTGACCAAGGACTCACAGTTTGCCCAGGATCAGCCGCAGGATCTATCCCTGAAACGGGGTCGCGACGAGGAGACCCAGGATTATCAGCAGCCGGAACCGAAACGTGACTATGTGCTGAACCTTTCAAAAACACCGGAAAGGAACTCCAGCTCTAGCTCCAACTCCTGCCTGCTGTCGCCGCCAGTGGAGGCCCAGGATTACCTGCCCACCGAAATCCATATGCGTGGACTAACGGCAGGAACAACGGGATATACCACCGCCACCCCCACCACGATTAATCCCTTCCAGTCCGCCTTTGTGATGGCCGCCGGTTGCAATCCGATCTCTGCCCTGTGGAGCAGCTATCAGCCCCATCTGGCCGCCTTCCCCTCGCCAGCCAGCTCGATGGCCTCGCCCCAGTCGGTCTACAGCTACCAGCAGATGACGCCGCCCTCCAGCCCCGGATCCGATCTGGAAACCGGTTCCGAGCCAGAGGATCTTTCAGTGCGAAATGACATCCCACTGCCGGCTCTGTTCCACCTTTTCGATGAGGCCAAGTCCAGCAGCAGCGGTGCCAGTGTAAGCAGCTCATCGGGATACTCCTACACTCCGGCCATGAGTGCCTCGTCGGCGAGTGTTGCCGCCAATCATGCCAAAAACTACCGCTTCAAGTGCGACGAGTGCCAGAAGATGTACTCCACCTCGATGGGCCTGTCCAAGCACCGTCAGTTCCACTGCCCGGCAGCCGAGTGTAATCAGGAGAAGAAGACCCACTCCTGCGAGGAGTGTGGAAAGCTGTACACCACCATTGGAGCCCTGAAGATGCACATCCGCACCCACACTCTGCCCTGCAAGTGCCCCATTTGCGGCAAGGCCTTCTCTCGACCCTGGCTGCTCCAGGGACACATCCGCACCCACACTGGAGAGAAGCCTTTCCAGTGCCCCGACTGCCCACGATCCTTTGCCGACCGCTCGAACCTGCGAGCTCATCAGCAGACCCACGTGGACGTCAAGAAGTACGCCTGCCAGGTGTGCCACAAATCTTTCTCCAGGATGTCGCTCCTGAACAAGCACTCCAGCTCCAACTGCACCATCACTATTGCG

CDS AA Sequence2

MAANYKSCPLKKRPIVFVEERLPQTEALALTKDSQFAQDQPQDLSLKRGRDEETQDYQQPEPKRDYVLNLSKTPERNSSSSSNSCLLSPPVEAQDYLPTEIHMRGLTAGTTGYTTATPTTINPFQSAFVMAAGCNPISALWSSYQPHLAAFPSPASSMASPQSVYSYQQMTPPSSPGSDLETGSEPEDLSVRNDIPLPALFHLFDEAKSSSSGASVSSSSGYSYTPAMSASSASVAANHAKNYRFKCDECQKMYSTSMGLSKHRQFHCPAAECNQEKKTHSCEECGKLYTTIGALKMHIRTHTLPCKCPICGKAFSRPWLLQGHIRTHTGEKPFQCPDCPRSFADRSNLRAHQQTHVDVKKYACQVCHKSFSRMSLLNKHSSSNCTITIA

1   H. sapiens orthologs were obtained from InParanoid8, in particular D.melanogaster-H.sapiens.orthoXML.
2   Genomic sequences of the transcription factors were obtained from the dm3/BDGP Release 5 genome assembly. In the case of cofactors, the genomic sequences stand for our results obtained by deep sequencing.