Factors @ Stark Lab

Gene Name Type Activity (log2) in S2 cells
(avg/min/max)
Cluster Data available
S2Kc167BG3OSCHeLa
Smox (FBgn0025800) TF
 
(1.43/0.14/3.45)

Factor activity

Additional information

Smox [FlyBase] | Smox [FlyMine] | Smox [BDGP]

H. sapiens orthologues1

SMAD3 (HGNC:6769, ENSG00000166949), SMAD2 (HGNC:6768, ENSG00000175387)

Functionally similar transcription factors and cofactors

CDS DNA Sequence2

ATGTTGCCATTCACCCCGCAGGTGGTCAAGCGTTTGTTAGCACTCAAAAAGGGCAACGAGGACAACAGCGTCGAGGGCAAGTGGTCAGAGAAGGCCGTCAAGAATCTGGTCAAGAAGATCAAGAAGAATTCGCAGCTGGAGGAGCTAGAGCGCGCGATCTCCACACAGAACTGCCAGACGCGGTGCGTGACGGTGCCGCGCAGCAAGCCAGCTCCCGCCGGCGAGCATCTGCGCAAGGGTCTGCCGCACGTCATCTATTGCCGCCTGTGGCGCTGGCCCGATCTCCAGAGTCAGAATGAACTAAAGCCCCTCGATCATTGCGAGTACGCCTTCCATTTGCGCAAGGAGGAGATCTGCATAAATCCGTACCACTACAAAAAAATTGAACTGTCCATCCTGGTGCCCAAATCGCTGCCCACGCCGCCCGACTCCATTGTGGACTATCCGCTGGACAACCATACGCACCAGATACCCAACAACACCGATTACAATGCGGCGATCATTCGCAGCGCCTCGTTGAGTCCGCCGCAGTACATGGAATTGGGCGGTGCCGGGCCCGTTTCCGTATCATCGTCTGCCAGTTCGACGCCAGCGACTGCCGCCGGTGGTGGTGGTGGTCCCTCCTCGTCGTCGTCGTCGTCATCGTCCGCCGCCTCCGCCTATCAACAGCAACAGCAGCAGCTGTCCTTTGGCCAAAACATGGACTCTCAATCGAGTGTGCTTAGTGTGGGCAGCAGCATTCCCAACACCGGCACCCCGCCGCCCGGCTATATGAGCGAGGATGGTGACCCCATCGATCCTAACGACAACATGAACATGTCGCGTCTAACGCCGCCCGCCGATGCAGCGCCGGTGATGTACCACGAGCCGGCCTTTTGGTGTTCCATCTCCTACTATGAGCTAAATACGCGTGTCGGCGAGACGTTCCATGCCTCGCAGCCCTCGATCACGGTGGATGGCTTTACCGATCCCTCCAATTCGGAGCGCTTTTGCCTCGGACTGCTGTCTAATGTGAATCGCAACGAGGTCGTGGAGCAGACACGTCGCCACATCGGCAAGGGCGTACGGCTTTACTATATTGGCGGTGAGGTATTCGCAGAATGTCTGAGCGATTCGTCCATTTTCGTACAGAGCCCAAATTGTAATCAGCGATATGGCTGGCATCCGGCCACCGTATGCAAGATACCGCCCGGTTGCAACCTAAAGATCTTCAACAACCAGGAGTTTGCCGCCCTGCTGTCGCAGTCCGTGTCGCAGGGATTCGAAGCGGTCTACCAATTGACACGCATGTGCACCATCCGCATGTCGTTCGTCAAGGGCTGGGGCGCCGAATATCGCCGCCAGACGGTGACCTCAACGCCCTGCTGGATCGAACTCCATCTGAACGGGCCGCTCCAGTGGCTGGATCGCGTGCTCACACAGATGGGTTCGCCACGGCTGCCGTGCAGCTCCATGTCA

CDS AA Sequence2

MLPFTPQVVKRLLALKKGNEDNSVEGKWSEKAVKNLVKKIKKNSQLEELERAISTQNCQTRCVTVPRSKPAPAGEHLRKGLPHVIYCRLWRWPDLQSQNELKPLDHCEYAFHLRKEEICINPYHYKKIELSILVPKSLPTPPDSIVDYPLDNHTHQIPNNTDYNAAIIRSASLSPPQYMELGGAGPVSVSSSASSTPATAAGGGGGPSSSSSSSSSAASAYQQQQQQLSFGQNMDSQSSVLSVGSSIPNTGTPPPGYMSEDGDPIDPNDNMNMSRLTPPADAAPVMYHEPAFWCSISYYELNTRVGETFHASQPSITVDGFTDPSNSERFCLGLLSNVNRNEVVEQTRRHIGKGVRLYYIGGEVFAECLSDSSIFVQSPNCNQRYGWHPATVCKIPPGCNLKIFNNQEFAALLSQSVSQGFEAVYQLTRMCTIRMSFVKGWGAEYRRQTVTSTPCWIELHLNGPLQWLDRVLTQMGSPRLPCSSMS

1   H. sapiens orthologs were obtained from InParanoid8, in particular D.melanogaster-H.sapiens.orthoXML.
2   Genomic sequences of the transcription factors were obtained from the dm3/BDGP Release 5 genome assembly. In the case of cofactors, the genomic sequences stand for our results obtained by deep sequencing.