Factors @ Stark Lab

Gene Name Type Activity (log2) in S2 cells
(avg/min/max)
Cluster Data available
S2Kc167BG3OSCHeLa
Hdac3 (FBgn0025825) cofactor
 
(-0.26/-2.46/0.40)

Factor activity

Additional information

Hdac3 [FlyBase] | Hdac3 [FlyMine] | Hdac3 [BDGP]

H. sapiens orthologues1

HDAC3 (HGNC:4854, ENSG00000171720)

Functionally similar transcription factors and cofactors

CDS DNA Sequence2

ATGACGGACCGTAGGGTGTCGTACTTCTACAACGCGGACGTGGGCAACTTCCACTATGGAGCCGGGCATCCCATGAAGCCGCAACGCCTGGCGGTCACTCACAGCCTGGTAATGAACTACGGACTGCACAAGAAAATGAAGATCTACAGGCCGTACAAGGCCAGTGCGCAGGACATGCTCCGCTTCCACAGCGACGAGTACATCGCCTACTTACAGCAGGTGACTCCACAAAACATTCAGTGCAATTCCGTGGCCTATACGAAGTACCTGGCGCACTTCAGCGTAGGCGAGGACTGTCCCGTGTTCGATGGCCTCTTCGACTTCTGTGCAATGTACACGGGTGCCTCGCTGGAGGGAGCCCAGAAGCTGAACCACAACCACAGCGACATATGCATAAACTGGTCGGGCGGACTGCATCACGCCAAGAAGTTCGAGGCAAGCGGATTCTGCTACGTGAATGACATCGTCATCGGCATTCTGGAGCTGCTTAAGTACCATCCTCGGGTGCTCTACATCGACATCGATGTGCACCACGGCGACGGGGTGCAGGAGGCGTTCTACCTTACGGACCGAGTGATGACGGCTTCGTTCCACAAATACGGAAACTACTTTTTTCCCGGCACGGGAGACATGTACGAGATAGGCGCCGAATCGGGACGATACTACAGCGTTAATGTGCCGCTAAAGGAGGGCATTGATGACCAGAGCTATTTTCAGGTGTTCAAACCCATAATTTCTGCCATTATGGACTTCTACCGGCCCACGGCTATCGTTTTGCAGTGTGGCGCGGATTCACTAGCTGGAGATCGACTAGGTTGCTTCTCCCTGAGCACCAAGGGACATGGTGAGTGTGTCAAATTTGTGAAGGAACTGAACGTACCCACATTGGTGGTCGGAGGCGGTGGCTACACCTTACGGAACGTGGCCCGCTGCTGGACGCACGAGACCTCGCTGCTGGTGGACCAAGACATTGAAAATGACCTACCCGCCACCGAGTATTACGACTTTTTCGCCCCCGACTTTACACTCCATCCAGAGATTAACTCACGCCAAGATAATGCTAACTCAAAGCAGTATCTTGAACCCATCGTTAAGCATGTGTATGAAAACCTTAAGATGTGCCAGCACTCGCCCAGCGTCCAAATGGTGCAGACCCCGCCTGATGTGGACTTGGAGGAGCTGCGCAGCAACCGGGAGGAGGCGAGTGATCCCGACGTGCGAATATCCGTAGCCGATGAGGACAAGCTGGTTGATGCTAAGAACGAGTTCTACGACGGCGATCAGGACCAAGACAAGCCCGATTCGGCAGAAAGT

CDS AA Sequence2

MTDRRVSYFYNADVGNFHYGAGHPMKPQRLAVTHSLVMNYGLHKKMKIYRPYKASAQDMLRFHSDEYIAYLQQVTPQNIQCNSVAYTKYLAHFSVGEDCPVFDGLFDFCAMYTGASLEGAQKLNHNHSDICINWSGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDVHHGDGVQEAFYLTDRVMTASFHKYGNYFFPGTGDMYEIGAESGRYYSVNVPLKEGIDDQSYFQVFKPIISAIMDFYRPTAIVLQCGADSLAGDRLGCFSLSTKGHGECVKFVKELNVPTLVVGGGGYTLRNVARCWTHETSLLVDQDIENDLPATEYYDFFAPDFTLHPEINSRQDNANSKQYLEPIVKHVYENLKMCQHSPSVQMVQTPPDVDLEELRSNREEASDPDVRISVADEDKLVDAKNEFYDGDQDQDKPDSAES

1   H. sapiens orthologs were obtained from InParanoid8, in particular D.melanogaster-H.sapiens.orthoXML.
2   Genomic sequences of the transcription factors were obtained from the dm3/BDGP Release 5 genome assembly. In the case of cofactors, the genomic sequences stand for our results obtained by deep sequencing.