Factors @ Stark Lab

Gene Name Type Activity (log2) in S2 cells
(avg/min/max)
Cluster Data available
S2Kc167BG3OSCHeLa
Mkrn1 (FBgn0029152) cofactor
 
(-0.00/-2.58/0.96)

Factor activity

Additional information

Mkrn1 [FlyBase] | Mkrn1 [FlyMine] | Mkrn1 [BDGP]

H. sapiens orthologues1

MKRN4P (HGNC:7115, ENSG00000238222), MKRN1 (HGNC:7112, ENSG00000133606), MKRN3 (HGNC:7114, ENSG00000179455), MKRN2 (HGNC:7113, ENSG00000075975)

Functionally similar transcription factors and cofactors

CDS DNA Sequence2

ATGAGTGCCGTCACCAGCAGCGATACAGCCATCAGCGGCATGGCTCTTGGCCGGAGCCAGACCATCTGCCGCTACTACGTGCGCGGCATCTGCCGCTTTGGGGAACTTTGCCGCTTCTCCCACGACCTGAGCCGCGGTCGTCCCGAGTGCGAGGAGCAGGTGGCCACCGACGTGCTGCCGAAGCCTAGTACAAGCAGCAGCAGCACCATTGGCAGCCGCAGCGCCAGCATCTCCAGTCAGCAGAGGAACTGGGCGAACGCCCCTGTGTTTGTGCCTAGCCAAAAGCGCTATACTGCCCACGAACAAAGCGAATTTGAGACCACTGTGGACCCTGAGGCGGTGATGGAGGCGCAGGCTGGAGCCAGCTACGATACATTAGCCCCGGGTGTCTCCTGGGCCGAAGTAGTGGGCGGACCTTCGTCTCTGAACAAAGAGGACTATGGCGAGGAGAACAGTTCCTGCGCCTGGGGCGAATTCTCCGCTTACCCCATTCACATGGAGCTGTGCGAAATGTGCGACCAGTATTGCCTGCATCCCACGGATCAAGTTCAGCGGAGGAGTCACAACCGTGAGTGCCTTCAGCAGCACGAGCAGGCCATGGAGCTGTCCTTCGCCATTGCCAGATCCAAGGACAAGACGTGCGGCATCTGCTTTGACACGATTATGGAAAAGGCGGGAAGAGAAAAGCGCTTCGGCATTCTCCCCAACTGCAACCACATATTCTGCTTGGAGTGCATTCGCACATGGCGTCAGGCCAAACAGTTTGAGAACAAAATAACGCGAGCTTGCCCCGAATGTCGCGTGTGCTCGGATTTTGTCTGTCCCAGTGCGTTCTGGATGGAGACCAAGGAGGAAAAGGACAAATTGCTCAACGATTACCGCGCCGCTTTGGGAGCAAAGGACTGCAAATACTTTAAAAAAGGAGAGGGCAAGTGCCCCTTTGGTAACAAGTGTTTCTACAAGCACGCTCTGCCCAACGGAGATATCGTCGATGTGGGTTTGCCGAAGCGCACCCGAAAGTTACAGAGCCAGAATGAAATAATCGATTTAATTGATATATATCTCTGGGACTACGTAGATCGGCGAGATTATCATTGGCTGGAGATGATTTCAAGTGATATTACTAGTTCCGAAAGTTCAGATTACTCGGATGAAGAC

CDS AA Sequence2

MSAVTSSDTAISGMALGRSQTICRYYVRGICRFGELCRFSHDLSRGRPECEEQVATDVLPKPSTSSSSTIGSRSASISSQQRNWANAPVFVPSQKRYTAHEQSEFETTVDPEAVMEAQAGASYDTLAPGVSWAEVVGGPSSLNKEDYGEENSSCAWGEFSAYPIHMELCEMCDQYCLHPTDQVQRRSHNRECLQQHEQAMELSFAIARSKDKTCGICFDTIMEKAGREKRFGILPNCNHIFCLECIRTWRQAKQFENKITRACPECRVCSDFVCPSAFWMETKEEKDKLLNDYRAALGAKDCKYFKKGEGKCPFGNKCFYKHALPNGDIVDVGLPKRTRKLQSQNEIIDLIDIYLWDYVDRRDYHWLEMISSDITSSESSDYSDED

1   H. sapiens orthologs were obtained from InParanoid8, in particular D.melanogaster-H.sapiens.orthoXML.
2   Genomic sequences of the transcription factors were obtained from the dm3/BDGP Release 5 genome assembly. In the case of cofactors, the genomic sequences stand for our results obtained by deep sequencing.