Factors @ Stark Lab

Gene Name Type Activity (log2) in S2 cells
(avg/min/max)
Cluster Data available
S2Kc167BG3OSCHeLa
Dsp1 (FBgn0011764) TF
 
(-0.43/-3.13/0.51)

Factor activity

Additional information

Dsp1 [FlyBase] | Dsp1 [FlyMine] | Dsp1 [BDGP]

H. sapiens orthologues1

HMGB1 (HGNC:4983, ENSG00000189403), HMGB1P1 (HGNC:4993, ENSG00000124097), HMGB2 (HGNC:5000, ENSG00000164104), HMGB3 (HGNC:5004, ENSG00000029993)

Functionally similar transcription factors and cofactors

CDS DNA Sequence2

ATGGAACACTTTCATCAAATACAGCAATTGGCTGCTCAGCAACAACAACAAGTACAACAGCAACAGTTGCAACAACACCAGGTGGTCGTCCAGCAGAATCAGCAGCAGGCGCACCAGAACAGCTCCAATACCACAGCCGGCGTGGGCACCCAACAGCTGTTCACATACAAAATGGCCAGCAGTTTTCCGAATCCGGCCACGACGATGGCCCAAGTGGTGGCCACATCGAACGCAGCCGGCACCACGGGCTATGATTATCGTCTAAATATGGCACAGGCAGCCGCAGCAGCAGCCGTACCCGGCTCCCAGTGGTGGTATTCGGCCGCCAATCAGGGACAGGTCGATGCCAATACAGCGGCGCAACTGCAGCACCAGCAGCAGCAACAGCAACAGCAACAACAGCAGCAGCAGCAACAGCACCAGCAGCAACAACAGATGCAACAGCAGCAGCAGCAACAGAATGTCATCAATTCGGCGAGCCCCATGAGCAGAGTCAAGGCCGATGCCAAGCCCAGAGGCCGAATGACCGCCTACGCATACTTTGTACAAACTTGCAGAGAGGAGCACAAAAAGAAACATCCCGATGAGACGGTGATATTCGCCGAATTCTCGCGGAAGTGCGCCGAACGGTGGAAGACAATGGTGGACAAGGAGAAGAAGCGCTTCCACGAAATGGCCGAGAAGGACAAGCAGCGATATGAGGCGGAAATGCAGAACTATGTGCCGCCCAAGGGAGCGGTTGTGGGACGCGGCAAGAAGAGGAAACAGATCAAGGACCCCAATGCTCCAAAACGTTCATTGTCTGCGTTCTTCTGGTTCTGCAATGACGAGAGAAATAAGGTGAAGGCACTTAATCCCGAGTTCGGAGTGGGCGACATCGCCAAAGAGCTGGGACGAAAGTGGTCCGATGTGGATCCCGAGGTCAAGCAGAAGTACGAGTCGATGGCCGAGCGGGACAAGGCTCGATATGAACGCGAGATGACCGAGTACAAGACGAGCGGGAAAATAGCCATGTCCGCACCGTCGATGCAGGCGTCGATGCAGGCGCAGGCACAGAAAGCCGCGTTACTTGCCGCCGCTGCCCAGCAGCAGCACCAGCAGCTGGAAGAGCAGCACGACGACGACGACGGCGATGGAGATGATGACGAGAACCAA

CDS AA Sequence2

MEHFHQIQQLAAQQQQQVQQQQLQQHQVVVQQNQQQAHQNSSNTTAGVGTQQLFTYKMASSFPNPATTMAQVVATSNAAGTTGYDYRLNMAQAAAAAAVPGSQWWYSAANQGQVDANTAAQLQHQQQQQQQQQQQQQQQHQQQQQMQQQQQQQNVINSASPMSRVKADAKPRGRMTAYAYFVQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMAEKDKQRYEAEMQNYVPPKGAVVGRGKKRKQIKDPNAPKRSLSAFFWFCNDERNKVKALNPEFGVGDIAKELGRKWSDVDPEVKQKYESMAERDKARYEREMTEYKTSGKIAMSAPSMQASMQAQAQKAALLAAAAQQQHQQLEEQHDDDDGDGDDDENQ

1   H. sapiens orthologs were obtained from InParanoid8, in particular D.melanogaster-H.sapiens.orthoXML.
2   Genomic sequences of the transcription factors were obtained from the dm3/BDGP Release 5 genome assembly. In the case of cofactors, the genomic sequences stand for our results obtained by deep sequencing.